NGS Pipeline for Variant Calling

Genomics

Bioinformatics Pipeline

Variant Calling

Python

Snakemake

Developed a comprehensive NGS pipeline for variant calling in human WGS data, from FASTQ to annotated VCFs, using BWA, GATK, and Snakemake.

Published

Sunday, the 15th of January, 2023

Project Overview

This project focused on creating an automated and reproducible pipeline for… (full details of your project here)

We utilized BWA for alignment, GATK HaplotypeCaller for variant calling…

```{python}
# Example code snippet relevant to this project
def some_pipeline_function():
    print("Doing important work for Project Alpha!")
```