From Bench to Binary:

Bridging Molecular Biology and Bioinformatics

I am a scientist with over 10 years of research experience with a combination of both wet lab expertise and biological data analysis to solve complex biological problems.

Expertise Areas
  • Laboratory Skills
    • Cell-based assay development
    • Sequencing library preparation for nanopore sequencing - DNA, cDNA, direct RNA
    • DNA/RNA isolation and QC
    • Cloning and Site-directed mutagenesis
    • PCR and qPCR (assay optimization)
    • Western Blots and ELISA
    • Immunofluorescence and Immunohistochemistry (IHC)
    • Fluorescence microscopy and High content imaging (Perking Elmer)
  • Computational Skills
    • NGS data analysis
      • Nanopore/longread sequencing data analysis
        • DNA sequencing data for genome assemblies
        • direct RNA sequencing data for identifying modifications and transcriptomics analyses
      • Illumina/short read sequencing data analysis
        • RNA sequencing data analysis
        • DNA sequencing for use in generating hybrid genome assemblies
    • Python scripting
      • data wrangling using pandas library
      • data visualization using matplotlib, seaborn
      • Jupyter notebooks for documentation and analysis
      • scripts for automation of complex and routine tasks
    • BASH scripting
    • Nextflow for writing pipelines for reproducible analyses
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